Package: hlaR
Type: Package
Title: Tools for HLA Data
Version: 1.0.0
Description: A streamlined tool for eplet analysis of donor and
        recipient HLA (human leukocyte antigen) mismatch. Messy,
        low-resolution HLA typing data is cleaned, and imputed to
        high-resolution using the NMDP (National Marrow Donor Program)
        haplotype reference database
        <https://haplostats.org/haplostats>. High resolution data is
        analyzed for overall or single antigen eplet mismatch using a
        reference table (currently supporting 'HLAMatchMaker'
        <http://www.epitopes.net> versions 2 and 3). Data can enter or
        exit the workflow at different points depending on the user's
        aims and initial data quality.
Authors@R: c(person("Joan","Zhang",email = "joan.zhang@emory.edu", role = c("aut", "cre")),
             person("Aileen","Johnson",email = "aileen.johnson@emory.edu ", role = c("aut")),
             person("Christian P","Larsen",email = "clarsen@emory.edu", role = c("cph", "aut")))
Depends: R (>= 4.1.0)
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.2
Suggests: knitr, rmarkdown
URL: https://pubmed.ncbi.nlm.nih.gov/35101308/,
        https://emory-larsenlab.shinyapps.io/hlar_shiny/
BugReports: https://github.com/LarsenLab/hlaR/issues
VignetteBuilder: knitr
Imports: devtools, tidyverse, dplyr, reshape2, schoolmath, tibble,
        tidyselect, stringr, purrr, tidyr, utils, readr, janitor
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev git make libharfbuzz-dev libgit2-dev libicu-dev
        libjpeg-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev
        libxml2-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://larsenlab.r-universe.dev
Date/Publication: 2023-03-02 21:38:22 UTC
RemoteUrl: https://github.com/larsenlab/hlar
RemoteRef: HEAD
RemoteSha: a7fec958e00d3a7b00f5128900c6b328c2bcb75c
NeedsCompilation: no
Packaged: 2026-10-20 07:05:04 UTC; root
Author: Joan Zhang [aut, cre],
  Aileen Johnson [aut],
  Christian P Larsen [cph, aut]
Maintainer: Joan Zhang <joan.zhang@emory.edu>